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Machine Learning

Biodesign

+8

From Working to Holding in AI Biodesign

Apr 30, 2026

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6 min read

From Working to Holding in AI Biodesign

Why experimental validation doesn’t guarantee structural reliability in protein design

Raphael Kim
Raphael Kim

Biodesign

+7

AI is Not the Opposite of Nature

Oct 19, 2025

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7 min read

AI is Not the Opposite of Nature

Why we need to talk about responsibility before intelligence.

Raphael Kim
Raphael Kim

Biodesign

+3

Before you build: instant safety briefs for biodesign projects

Oct 5, 2025

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6 min read

Before you build: instant safety briefs for biodesign projects

A Co-Pilot for safer biodesign

Raphael Kim
Raphael Kim

Biodesign Fundamentals

+4

Newsletter #30: Games, Gaps, and Agents

Aug 21, 2025

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10 min read

Newsletter #30: Games, Gaps, and Agents

What's been brewing this week?

Raphael Kim
Raphael Kim

Algae

+15

History and Scope of AI in Biodesign

Aug 14, 2025

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22 min read

History and Scope of AI in Biodesign

A Career-Oriented Guide for Students & Educators

Raphael Kim
Raphael Kim

Research Tool

+13

AI Is Changing How We Make Bio-Materials

Aug 3, 2025

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9 min read

AI Is Changing How We Make Bio-Materials

And Why Biodesigners Should Care

Raphael Kim
Raphael Kim

Research Tool

+6

The Enzyme Whisperers

Jul 29, 2025

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9 min read

The Enzyme Whisperers

AI that reads sequences like fortune tellers read palms (and actually gets the predictions right)

Raphael Kim
Raphael Kim

Research Tool

+6

Designing with Shape‐Shifting (Fold‐Switching) Proteins

Jul 18, 2025

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4 min read

Designing with Shape‐Shifting (Fold‐Switching) Proteins

Research Tool

+2

From Observer to Designer: A Complete Toolkit for Slime Mold Biodesign
LockSimple

Jul 15, 2025

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9 min read

From Observer to Designer: A Complete Toolkit for Slime Mold Biodesign

Transforming Physarum polycephalum from scientific curiosity to design medium

Research Tool

+6

SCOBY Biodesign Idea Generator
LockSimple

Jul 7, 2025

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8 min read

SCOBY Biodesign Idea Generator

An AI Prompt Toolkit for Biodesign Academy Foundational Tier

Research Tool

+4

When Your AI Makes "Mistakes" That Are Actually Helpful
LockSimple

Jun 30, 2025

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6 min read

When Your AI Makes "Mistakes" That Are Actually Helpful

Introducing AlphaFaults as Biodesign Methodology

Foundational Tier

+7

Should We Compute or Cultivate?
LockSimple

May 6, 2025

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12 min read

Should We Compute or Cultivate?

AI, Biodesign, and the Real Environmental Trade-Offs

Paid Tier Preview

+4

AI for Regenerative Design: Introducing AlphaFold 3

Apr 22, 2025

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12 min read

AI for Regenerative Design: Introducing AlphaFold 3

Sustainable making and biodesign through computational insight

Machine Learning

+5

AI-Driven Protein Engineering: What it Means for Biodesign Practice

Mar 15, 2025

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11 min read

AI-Driven Protein Engineering: What it Means for Biodesign Practice

Lessons from a curious case of a tropical enzyme

Raphael Kim
Raphael Kim

Automotive

+5

Designing for Survival of the Safest

Oct 23, 2024

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12 min read

Designing for Survival of the Safest

Synthetic DNA and Machine Learning are Shaping Evolution of Electric Vehicles

Raphael Kim
Raphael Kim
Biodesign Academy

Biodesign Academy

Making sense of AI-driven biodesign

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